Inter-simple sequence repeat markers reveal strong genetic differentiation among populations of the endangered mollusc Patella ferruginea (Gastropoda: Patellidae) from two Sardinian marine protected areas

The giant Mediterranean limpet Patella ferruginea Gmelin, 1791 is an endangered marine gastropod, whose range has progressively shrinked to few, restricted areas, due to intense human exploitation. We have studied the genetic structure of the species, in order to (1) gather information about the levels of genetic variability within and between natural populations of P. ferruginea collected in two Sardinian marine protected areas (MPAs) (Penisola del Sinis—Isola di Mal di Ventre and Isola dell’ Asinara), and (2) make an attempt to find relationships between ecological and biological attributes of the species and the genetic differentiation of the populations studied. The genetic study was carried out by means of the analysis of ten inter-simple sequence repeat (ISSR) primers on a total of 40 individuals collected at four localities. Genetic analysis evidenced (1) medium to high levels of within-population genetic variability, (2) a pattern of genetic structuring that varied with spatial scales, and (3) a strong genetic differentiation between the two MPAs. Although preliminary, these results suggest that gene flow may be present only at very small geographic scale, raising concerns on the future of the conservation of the species.     

Hot spots in the bee hive

Honeybee colonies (Apis mellifera) maintain temperatures of 35-36°C in their brood nest because the brood needs high and constant temperature conditions for optimal development. We show that incubation of the brood at the level of individual honeybees is done by worker bees performing a particular and not yet specified behaviour: such bees raise the brood temperature by pressing their warm thoraces firmly onto caps under which the pupae develop. The bees stay motionless in a characteristic posture and have significantly higher thoracic temperatures than bees not assuming this posture in the brood area. The surface of the brood caps against which warm bees had pressed their thorax were up to 3.2°C warmer than the surrounding area, confirming that effective thermal transfer had taken place.     

Optimisation of a microbial bioassay for contaminated soil monitoring: bacterial inoculum standardisation and comparison with Microtox assay

This work represents the first step to set up a toxicity testing procedure and to evaluate the sensitivity of the test microorganism to several classes of environmental pollutants. First, three different techniques were employed to standardise the microbial inoculum, then two different toxicity assessment protocols have been compared: Microtox and a dehydrogenase (DHase) activity inhibition test. The main goal was the optimisation of a microbial bioassay based on the dehydrogenase activity (DHase) inhibition in Pseudomonas fluorescens bacterial strain ATCC 13525. Triphenyl tetrazolium chloride (TTC) was used as electron acceptor and its reduction produces Triphenyl formazane (TPF). The P. fluorescens DHase inhibition bioassay was investigated for being a reliable and rapid method for assessing toxicity. The optimisation of the operating conditions resulted in a repeatable bioassay. Then, P. fluorescens and Vibrio fischeri sensitivity were firstly compared by testing Zn++, one of the reference compounds for Microtox test. In addition, other compounds (Ni++, Cd++, Cu++, phenol) were also tested with both bioassays. A high statistical significance of data was obtained with the logistic curve. The present work has demonstrated that P. fluorescens is as sensitive as Microtox culture (V. fischeri), for some of the metal ions. With reference to organic compounds, the lower sensitivity of P. fluorescens to phenol makes its use difficult in organic polluted samples.     

Assessing risk and adaptation options to fires and windstorms in European forestry

Risks can generally be described as the combination of hazard, exposure and vulnerability. Using this framework, we evaluated the historical and future development of risk of fire and wind damage in European forestry at the national level. Fire risk is expected to increase, mainly as a consequence of an increase in fire hazard, defined as the Fire Weather Index in summer. Exposure, defined as forest area, is expected to increase slightly as a consequence of active afforestation and abandonment of marginal agricultural areas. Adaptation options to fire risk should therefore aim to decrease the vulnerability, where a change in tree species from conifers to broadleaves had most effect. Risk for wind damage in forests is expected to increase mainly as a consequence of increase in exposure (total growing stock) and vulnerability (defined by age class and tree species distribution). Projections of future wind climate indicate an increase in hazard (storminess) mainly over Western Europe. Adaptation options should aim to limit the increase in exposure and vulnerability. Only an increase in harvest level can stop the current build-up of growing stock, while at the same time it will lower vulnerability through the reduction of the share of old and vulnerable stands. Changing species from conifers to broadleaves helps to reduce vulnerability as well. Lowering vulnerability by decreasing the rotation length is only effective in combination with a high demand for wood. Due to data limitations, no forecast of future fire area or damaged timber amount by storms was possible.     

European scale application of atmospheric reactive nitrogen measurements in a low-cost approach to infer dry deposition fluxes

A European scale network was established in 2006 as part of the NitroEurope Integrated Project to infer reactive nitrogen (Nr) dry deposition fluxes, based on low-cost sampling of gaseous and aerosol species and inferential modelling. The network provides monthly measurements of NH₃, NH₄⁺, HNO₃ and NO₃⁻, as well as SO₂, SO₄²⁻, HCl, Cl⁻ and base cations at 58 sites. Measurements are made with an established low-cost denuder methodology (DELTA) as a basis to: (1) examine temporal trends and spatial patterns across Europe, (2) improve and calibrate inferential modelling techniques to estimate exchange of Nr species, (3) provide best estimates of atmospheric dry N deposition, and (4) permit an analysis of net GHG exchange in relation to atmospheric and agricultural N inputs at the European scale. Responsibility for measurements is shared among seven European laboratories. An inter-comparison of the DELTA implementation by 6 laboratories at 4 test sites (Montelibretti, Italy; Braunschweig, Germany; Paterna, Spain and Auchencorth, UK) from July to October 2006 provided training for the laboratories and showed that good agreement was achieved in different climatic conditions (87% of laboratory site-means within 20% of the inter-laboratory median). Results obtained from the first year of measurements show substantial spatial variability in atmospheric Nr concentrations, illustrating the major local (NH₃) and regional (HNO₃, NO₃⁻, and NH₄⁺) differences in Nr concentrations. These results provide the basis to develop future estimates of site-based Nr dry deposition fluxes across Europe, and highlight the role of NH₃, largely of agricultural origin, which was the largest single constituent and will dominate dry Nr fluxes at most sites.     

Probability distributions of arsenic in soil from brownfield sites in Beijing (China): statistical characterization of the background populations and implications for site assessment studies

A probabilistic analysis was performed on soil arsenic concentration data from 4 brownfield sites at Beijing (Chaoyang and Haidian Districts), involved in environmental assessment studies. The available data sets were processed to provide a statistical characterization of the background populations and differentiate “anomalous data” from the natural range of variation of arsenic concentrations in soil. The site-specific background distributions and the existing wide-scale background values defined for the Beijing area were compared, discussing related implications for the definition of metal contamination soil screening levels (SSLs) in site assessment studies. The statistical analysis of As data sets discriminated site-specific background populations, encompassing 88% to 94% of the sample data, from outliers values, associated with either subsoil natural enrichments or possible anthropogenic releases. Upper Baseline Concentration (UBC) limits (+ 2σ level), including most of the site-specific metal background variability, were derived based on the statistical characterization of the background populations. Sites in the Chaoyang South District area had UBC values in the range 10.4–12.6 mg·kg^-1. These ranges provide meaningful SSL values to be adopted for As in local site assessment studies. Using the wide-scale background value for the Beijing area would have erroneously classified most of the areas in the subject sites as potentially contaminated.     

A permutation-based combination of sign tests for assessing habitat selection

The analysis of habitat selection in radio-tagged animals is approached by comparing the portions of use against the portions of availability observed for each habitat type. Since data are linearly dependent with singular variance-covariance matrices, standard multivariate statistical tests cannot be applied. To bypass the problem, compositional data analysis is customarily performed via log-ratio transform of sample observations. The procedure is criticized in this paper, emphasizing the several drawbacks which may arise from the use of compositional analysis. An alternative nonparametric solution is proposed in the framework of multiple testing. The habitat use is assessed separately for each habitat type by means of the sign test performed on the original observations. The resulting p values are combined in an overall test statistic whose significance is determined permuting sample observations. The theoretical findings of the paper are checked by simulation studies. Applications to case studies previously considered in literature are discussed.     

Ammonia as confounding factor in toxicity tests with the sea urchin Paracentrotus lividus (Lmk)

The aim of this study was to investigate the toxicity of total ammonia towards sea urchin bioassays, in order to elucidate the role of ammonia as confounding factor in sediment quality assessment studies. New toxicity data, expressed as EC50, NOEC and LOEC are reported for Paracentrotus lividus based on experiments at differing pH values. Results confirmed that sperm cell toxicity test is not very sensitive to ammonia, while total ammonia embryotoxicity is strictly pH dependent. Accurate observations of embryotoxic effects at increasing total ammonia concentrations evidenced progressive shifts from malformed plutei to gastrula and blastula blockages. Toxicity data obtained for P. lividus are comparable with previous results with other echinoid species.     

Transcending scale dependence in identifying habitat with resource selection functions

Multi-scale resource selection modeling is used to identify factors that limit species distributions across scales of space and time. This multi-scale nature of habitat suitability complicates the translation of inferences to single, spatial depictions of habitat required for conservation of species. We estimated resource selection functions (RSFs) across three scales for a threatened ungulate, woodland caribou (Rangifer tarandus caribou), with two objectives: (1) to infer the relative effects of two forms of anthropogenic disturbance (forestry and linear features) on woodland caribou distributions at multiple scales and (2) to estimate scale-integrated resource selection functions (SRSFs) that synthesize results across scales for management-oriented habitat suitability mapping. We found a previously undocumented scale-specific switch in woodland caribou response to two forms of anthropogenic disturbance. Caribou avoided forestry cut-blocks at broad scales according to first- and second-order RSFs and avoided linear features at fine scales according to third-order RSFs, corroborating predictions developed according to predator-mediated effects of each disturbance type. Additionally, a single SRSF validated as well as each of three single-scale RSFs when estimating habitat suitability across three different spatial scales of prediction. We demonstrate that a single SRSF can be applied to predict relative habitat suitability at both local and landscape scales in support of critical habitat identification and species recovery.     

Evaluation of geomorphic changes and retreat rates of a coastal pyroclastic cliff in the Campi Flegrei volcanic district,southern Italy

Geomorphic evolution of sea cliffs has significant impact on coastal settlements worldwide, so that evaluation of cliff instability processes, failure factors, and retreat rates involves a growing number of scientists for coastal risk and management purposes. Aerial photogrammetry and lidar are among the most used techniques for topographic characterization and geomorphic monitoring of coastal environments. A crucial role in the combined use of such techniques is the evaluation of different spatial accuracy and co-registration between derived terrain models, so that a robust error analysis is required. In this study, we present a change detection analysis of the Torrefumo coastal cliff, in the Campi Flegrei volcanic area (Southern Italy). Aerial images taken in 1956 and 1974, processed through digital photogrammetry, and an airborne lidar point cloud acquired in 2008 were used to produce Digital Elevation Models of the cliff. The analysis was based on the multi-temporal comparison of these models and included the calculation of volumetric changes and average retreat rates of the cliff face with reference to the 1956–1974 and 1974–2008 time intervals. The spatially variable elevation uncertainty of each Digital Elevation Model was evaluated with a probabilistic approach based on the fuzzy set theory. The results of this study showed significant eroded volumes during the period 1956–1974 and relatively smaller volumes in the 1974–2008 time span, with mean annual retreat rates of 1.2 m/year and 0.17 m/year, respectively. We infer that the significant decrease of erosion characterizing the second period was induced by the sheltering effect at the base of the cliff produced by the construction of a seawall in the early 80’s.